HCA Data Explorer

An Atlas of Immune Cell Exhaustion in HIV-Infected Individuals Revealed by Single-Cell Transcriptomics.

Updated September 30, 2021

The effects of HIV infection on immune cell exhaustion at the transcriptomic level was investigated by analyzing single-cell RNA sequencing of peripheral blood mononuclear cells from four healthy subjects (37,847 cells) and six HIV-infected donors (28,610 cells).

Tariq M RanaUniversity of California San Diegotrana@ucsd.edu
Shaobo Wang1
Qiong Zhang1
Hui Hui1
Kriti Agrawal1
Maile Ann Young Karris1
Tariq M Rana1
1University of California San Diego
Ami Day

To reference this project, please use the following link:

https://explore.data.humancellatlas.dev.clevercanary.com/projects/0fd8f918-62d6-4b8b-ac35-4c53dd601f71
None
GEO Series Accessions:INSDC Project Accessions:INSDC Study Accessions:

Atlas

None

Analysis Portals

None

Project Label

ImmuneCellExhaustianHIV

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

blood

Organ Part

Unspecified

Selected Cell Types

Unspecified

Disease Status (Specimen)

HIV infectious disease

Disease Status (Donor)

HIV infectious disease

Development Stage

human adult stage

Library Construction Method

10X 3' v2 sequencing

Nucleic Acid Source

single cell

Paired End

false

File Format

4 file formats

Cell Count Estimate

43.7k

Donor Count

4
bam4 file(s)fastq.gz124 file(s)loom5 file(s)tar1 file(s)