Single-cell transcriptomics provides insights into hypertrophic cardiomyopathy
Updated November 17, 2023Hypertrophic cardiomyopathy (HCM) is a genetic heart disease that is characterized by unexplained segmental hypertrophy that is usually most pronounced in the septum. While sarcomeric gene mutations are often the genetic basis for HCM, the mechanistic origin for the heterogeneous remodeling remains largely unknown. A better understanding of the gene networks driving the cardiomyocyte (CM) hypertrophy is required to improve therapeutic strategies. Patients suffering from HCM often receive a septal myectomy surgery to relieve outflow tract obstruction due to hypertrophy. Using single-cell RNA sequencing (scRNA-seq) on septal myectomy samples from patients with HCM, we identify functional links between genes, transcription factors, and cell size relevant for HCM. The data show the utility of using scRNA-seq on the human hypertrophic heart, highlight CM heterogeneity, and provide a wealth of insights into molecular events involved in HCM that can eventually contribute to the development of enhanced therapies.
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Atlas
Analysis Portals
NoneProject Label
WehrensHypertrophicCELSeq2Species
Homo sapiens
Sample Type
specimens
Anatomical Entity
heart
Organ Part
left ventricle myocardium
Selected Cell Types
Unspecified
Disease Status (Specimen)
hypertrophic cardiomyopathy
Disease Status (Donor)
hypertrophic cardiomyopathy
Development Stage
human adult stage
Library Construction Method
CEL-seq2
Nucleic Acid Source
single cell
Paired End
trueAnalysis Protocol
barcode_matrix_generation, raw_read_matrix_generation, transcript_matrix_generationFile Format
Cell Count Estimate
2.3kDonor Count
5