HCA Data Explorer

Single cell analysis of human fetal liver captures the transcriptional profile of hepatobiliary hybrid progenitors

Updated July 19, 2023

The liver parenchyma is composed of hepatocytes and bile duct epithelial cells (BECs). Controversy exists regarding the cellular origin of human liver parenchymal tissue generation during embryonic development, homeostasis or repair. Here we report the existence of a hepatobiliary hybrid progenitor (HHyP) population in human fetal liver using single-cell RNA sequencing. HHyPs are anatomically restricted to the ductal plate of fetal liver and maintain a unique transcriptional profile distinct from fetal hepatocytes, mature hepatocytes and mature BECs. In addition, molecular heterogenicity within the EpCAM+ population of freshly isolated fetal and adult human liver reveals diverse gene expression signatures of hepatic and biliary lineage potential. Finally, we FACS isolated fetal HHyPs and confirmed their hybrid progenitor phenotype in vivo. Our study suggests that hepatobiliary progenitor cells previously identified in mice also exist in humans, and can be distinguished from other parenchymal populations, including mature BECs, by distinct gene expression profiles.

Joe M SegalKings college LondonJoe.segal8@gmail.com
Joe M Segal (Experimental Scientist)1
1Kings college London
Teresa Marquez
Pranav Muthuraman
Schwartz Rachel

To reference this project, please use the following link:

https://explore.data.humancellatlas.dev.clevercanary.com/projects/23587fb3-1a4a-4f58-ad74-cc9a4cb4c254

Supplementary links are provided by contributors and represent items such as additional data which can’t be hosted here; code that was used to analyze this data; or tools and visualizations associated with this specific dataset.

1.ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130473/suppl/GSE130473_Series_count_matrix.csv.gz,ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130473/suppl/GSE130473_Series_feature_matrix.csv.gz
INSDC Project Accessions:GEO Series Accessions:

Atlas

None

Analysis Portals

None

Project Label

HumanDevoLiverSegalRashid

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

liver

Organ Part

liver parenchyma

Selected Cell Types

2 cell types

Disease Status (Specimen)

normal

Disease Status (Donor)

normal

Development Stage

3 development stages

Library Construction Method

Smart-seq2

Nucleic Acid Source

single cell

Paired End

true

Analysis Protocol

MultiSampleSmartSeq2_v2.2.6, SmartSeq2SingleSample_v5.1.5

File Format

6 file formats

Cell Count Estimate

1.5k

Donor Count

8
bai1,475 file(s)bam1,475 file(s)csv.gz2 file(s)fastq.gz2,950 file(s)loom1 file(s)xlsx1 file(s)