HCA Data Explorer

Single-Cell Transcriptomics Reveal Immune Mechanisms of the Onset and Progression of IgA Nephropathy

Updated May 31, 2023

IgA nephropathy (IgAN) is the leading cause of kidney failure due to an incomplete understanding of its pathogenesis. We perform single-cell RNA sequencing (RNA-seq) on kidneys and CD14+ peripheral blood mononuclear cells (PBMCs) collected from IgAN and normal samples. In IgAN, upregulation of JCHAIN in mesangial cells provides insight into the trigger mechanism for the dimerization and deposition of IgA1 in situ. The pathological mesangium also demonstrates a prominent inflammatory signature and increased cell-cell communication with other renal parenchymal cells and immune cells, suggesting disease progress from the mesangium to the entire kidney. Specific gene expression of kidney-resident macrophages and CD8+ T cells further indicates abnormal regulation associated with proliferation and inflammation. A transitional cell type among intercalated cells with fibrosis signatures is identified, suggesting an adverse outcome of interstitial fibrosis. Altogether, we systematically analyze the molecular events in the onset and progression of IgAN, providing a promising landscape for disease treatment.

Xiangmei ChenChinese PLA General Hospitalxmchen301@126.com
Fuchou TangPeking Universitytangfuchou@pku.edu.cn
Ying Zheng (Co-Investigator)1
Ping Lu (Co-Investigator)2
Yiyao Deng1
Lu Wen2
Yong Wang1
Xin Ma1
Zhongxin Wang1
Lingling Wu1
Quan Hong1
Shuwei Duan1
Zhong Yin1
Bo Fu1
Guangyan Cai1
Xiangmei Chen (Principal Investigator)1
Fuchou Tang (Principal Investigator)2
1Chinese PLA General Hospital
2Peking University
Arsenios Chatzigeorgiou

To reference this project, please use the following link:

https://explore.data.humancellatlas.dev.clevercanary.com/projects/2caedc30-c816-4b99-a237-b9f3b458c8e5

Supplementary links are provided by contributors and represent items such as additional data which can’t be hosted here; code that was used to analyze this data; or tools and visualizations associated with this specific dataset.

1.https://ngdc.cncb.ac.cn/gsa-human/browse/HRA000342
None

Atlas

None

Analysis Portals

None

Project Label

IgANephropathySTRT

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

2 anatomical entities

Organ Part

3 organ parts

Selected Cell Types

5 cell types

Disease Status (Specimen)

2 disease statuses

Disease Status (Donor)

5 disease statuses

Development Stage

human adult stage

Library Construction Method

STRT-seq

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

downstream_analysis, raw_matrix_generation

File Format

2 file formats

Cell Count Estimate

3.6k

Donor Count

24
csv2 file(s)xlsx1 file(s)