HCA Data Explorer

Single-cell ATAC sequencing reveals the mechanism of human breast cancer metastasis

Updated January 25, 2023

To obtain more information about the lymph node metastasis of breast cancer cells, we selected the matched positive lymph nodes (PL), and negative lymph nodes (NL) of the same patient to perform integrated analysis. The PL, NL samples were analysed with single-cell ATAC sequencing. Overall design: Single cell ATACseq was performed using the 10X Genomics platform per the manufacturers instructions.

Kun XuNanjing Medical Universitynjmuxukun@126.com
Kun Xu (Experimental Scientist)1
1Nanjing Medical University
Parisa Nejad

To reference this project, please use the following link:

https://explore.data.humancellatlas.dev.clevercanary.com/projects/38e44dd0-c3df-418e-9256-d0824748901f
None
INSDC Project Accessions:GEO Series Accessions:INSDC Study Accessions:

Atlas

None

Analysis Portals

None

Project Label

scATACseqOfLymphNodeMetastasis

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

immune organ

Organ Part

lymph node

Selected Cell Types

Unspecified

Disease Status (Specimen)

luminal B breast carcinoma

Disease Status (Donor)

luminal B breast carcinoma

Development Stage

human adult stage

Library Construction Method

10x scATAC-seq

Nucleic Acid Source

single nucleus

Paired End

false

Analysis Protocol

analysis_protocol_1

File Format

5 file formats

Cell Count Estimate

11.3k

Donor Count

1
bed.gz2 file(s)fastq.gz4 file(s)mtx.gz2 file(s)tsv.gz4 file(s)xlsx1 file(s)