HCA Data Explorer

The Immune Atlas of Human Deciduas With Unexplained Recurrent Pregnancy Loss

Updated November 14, 2023

We profiled the transcriptomes of about 14,000 CD45+ single cells from 3 normal and 3 URPL deciduas within 8-10 gestational weeks. The cellular composition revealed six major subsets of immune cells including dNK, T cell, macrophage, dendritic cell (DC), mast cell, and B cell in the decidua.We identified previously unknown variations of immune cells including the decreased proportion of CSF1+CD59+ KIRs-expressing dNK subset and the increase of activated DC subset in URPL deciduas. Overall design: Profiling the transcriptomes of about 14,000 CD45+ single cells from 3 normal and 3 URPL deciduas using single-cell RNA Seq.

Mou LishaShenzhen Second People's Hospitallishamou@gmail.com
Mou Lisha (Experimental Scientist)1
1Shenzhen Second People's Hospital
Schwartz Rachel

To reference this project, please use the following link:

https://explore.data.humancellatlas.dev.clevercanary.com/projects/3cfcdff5-dee1-4a7b-a591-c09c6e850b11
None
INSDC Project Accessions:GEO Series Accessions:INSDC Study Accessions:

Atlas

None

Analysis Portals

None

Project Label

deciduaPregnancyLoss

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

decidua

Organ Part

Unspecified

Selected Cell Types

leukocyte

Disease Status (Specimen)

normal

Disease Status (Donor)

normal

Development Stage

embryonic human stage

Library Construction Method

10x 3' v3 sequencing

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

analysis_protocol_1

File Format

4 file formats

Cell Count Estimate

14.0k

Donor Count

6
fastq.gz6 file(s)mtx.gz2 file(s)tsv.gz4 file(s)xlsx1 file(s)