HCA Data Explorer

A Cellular Anatomy of the Normal Adult Human Prostate and Prostatic Urethra

Updated August 30, 2023

A comprehensive cellular anatomy of normal human prostate is essential for solving the cellular origins of benign prostatic hyperplasia and prostate cancer. The tools used to analyze the contribution of individual cell types are not robust. We provide a cellular atlas of the young adult human prostate and prostatic urethra using an iterative process of single-cell RNA sequencing (scRNA-seq) and flow cytometry on ∼98,000 cells taken from different anatomical regions. Immunohistochemistry with newly derived cell type-specific markers revealed the distribution of each epithelial and stromal cell type on whole mounts, revising our understanding of zonal anatomy. Based on discovered cell surface markers, flow cytometry antibody panels were designed to improve the purification of each cell type, with each gate confirmed by scRNA-seq. The molecular classification, anatomical distribution, and purification tools for each cell type in the human prostate create a powerful resource for experimental design in human prostate disease.

Gervaise H HenryUT Southwesterngervaise.henry@utsouthwestern.edu
Gervaise H Henry (Computational Scientist)1
1UT Southwestern
Rachel A Schwartz
William Sullivan
Parisa Nejad

To reference this project, please use the following link:

https://explore.data.humancellatlas.dev.clevercanary.com/projects/53c53cd4-8127-4e12-bc7f-8fe1610a715c

Supplementary links are provided by contributors and represent items such as additional data which can’t be hosted here; code that was used to analyze this data; or tools and visualizations associated with this specific dataset.

1.https://doi.org/10.25548/W-R8CM; https://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr; http://strandlab.net/analysis.php
GEO Series Accessions:

Atlas

None

Analysis Portals

CZ CELLxGENECZ CELLxGENE
UCSC Cell BrowserUCSC Cell Browser

Project Label

ProstateCellAtlas

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

prostate gland

Organ Part

2 organ parts

Selected Cell Types

7 cell types

Disease Status (Specimen)

normal

Disease Status (Donor)

normal

Development Stage

human adult stage

Library Construction Method

10X v2 sequencing

Nucleic Acid Source

single cell

Paired End

false

File Format

6 file formats

Cell Count Estimate

108.7k

Donor Count

3
bam16 file(s)fastq.gz32 file(s)loom17 file(s)mtx.gz3 file(s)tsv.gz6 file(s)xlsx1 file(s)