HCA Data Explorer

A Single-cell Transcriptomic Atlas of Human Intervertebral Disc

Updated January 23, 2023

Using high-precision transcriptomics to systematically map the atlas of human intervertebral disc (IVD) at single-cell resolution. Consequently, we found remarkable cellular diversity in the human IVD and identified a set of signature markers to recognize the cell types spatially. Furthermore, we deciphered a biological classification of chondrocyte subclusters with distinct role in the ECM homeostasis.Notably, the critical clues were also discovered for progenitor cells with bi-lineage differentiation trajectories in the nucleus pulposus, which discriminatively marked by the ancestry molecules PDGFRA and PROCR and highly enriched PDGF network. Finally, we uncovered the potential vital factors maintaining the IVD homeostasis from the intercellular crosstalk based on the signaling network landscape of the IVD microenvironment. Overall design: Single-cell sequencing of 91,295 IVD cells from 3 nucleus pulposus, 2 cartilage endplate and 2 annulus fibrosus in IVD using the 10X genomics Kit.

Jian HeAcademy of Military Sciencesjianhe.amms@gmail.com
Jian He (Experimental Scientist)1
1Academy of Military Sciences
Parisa Nejad

To reference this project, please use the following link:

https://explore.data.humancellatlas.dev.clevercanary.com/projects/602628d7-c038-48a8-aa97-ffbb2cb44c9d
None
INSDC Project Accessions:GEO Series Accessions:INSDC Study Accessions:

Atlas

None

Analysis Portals

None

Project Label

AtlasOfHumanIntervertebralDisc

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

3 anatomical entities

Organ Part

3 organ parts

Selected Cell Types

3 cell types

Disease Status (Specimen)

normal

Disease Status (Donor)

normal

Development Stage

human adult stage

Library Construction Method

10x 3' V2 sequencing

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

analysis_protocol_1

File Format

3 file formats

Cell Count Estimate

91.3k

Donor Count

7
fastq.gz120 file(s)loom.gz7 file(s)xlsx1 file(s)