HCA Data Explorer

Single Cell RNA-Seq profiling human embryonic kidney cortex cells

Updated May 24, 2022

To characterize the cellular diversity in the human kidney cortical nephrogenic niche we dissociated cells from the cortex and performed 10X Genomics single-cell RNA sequencing.

Andrew P McMahonUniversity of Southern Californiaamcmachon@med.usc.edu
Andrew P McMahon (Principal Investigator)1
1University of Southern California
Parisa Nejad
Nguy CT Beagan
Pereira Tiana

To reference this project, please use the following link:

https://explore.data.humancellatlas.dev.clevercanary.com/projects/71436067-ac41-4ace-be1b-2fbcc2cb02fa

Supplementary links are provided by contributors and represent items such as additional data which can’t be hosted here; code that was used to analyze this data; or tools and visualizations associated with this specific dataset.

1.ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE102nnn/GSE102596/suppl/GSE102596_RAW.tar
INSDC Project Accessions:GEO Series Accessions:

Atlas

None

Analysis Portals

None

Project Label

CorticalNephrogenicNicheKidney

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

kidney

Organ Part

cortex

Selected Cell Types

nephrogenic zone cell

Disease Status (Specimen)

normal

Disease Status (Donor)

normal

Development Stage

fetal stage

Library Construction Method

10X 3' V2 sequencing

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

analysis_protocol_1

File Format

2 file formats

Cell Count Estimate

4.0k

Donor Count

1
fastq.gz6 file(s)tsv1 file(s)