HCA Data Explorer

Single-cell transcriptome profiling of the vaginal wall in women with severe anterior vaginal prolapse

Updated August 30, 2022

Anterior vaginal prolapse, as the most common form of POP, severely affect women’s physical and mental health. However, the cellular profiles of vaginal wall and molecular mechanism in pathological process of POP remain unclear. Here, we built the first single-cell transcriptomic atlas of prolapsed vaginal wall. We further revealed prolapse induced aberrant gene expression and transcriptional regulatory networks in cell-type specific manner in POP. Besides extracellular matrix dysregulation, dysfunction of immune cells and immune response were involved with prolapse occur. Computational prediction demonstrated that the abnormal cell-cell communication patterns present among fibroblasts, smooth muscle cells and macrophages in POP, with interplay in extracellular matrix remodeling and regulation of immune reaction. Taken together, our work provides the first comprehensive single-cell transcriptomic atlas for deciphering gene expression landscapes of heterogeneous cell types in prolapsed anterior vaginal wall, broadens our understanding of cell identities and cell-type-specific gene changes in POP and demonstrated the vital role of enhanced interplay between non-immune cells and immune cells in prolapsed vaginal wall. Overall design: scRNA-seq analysis of vaginal wall tissue in pelvic organ prolapse and control sample

Yun-Gui YangBeijing Institute of Genomicsygyang@big.ac.cn
Lan ZhuChinese Academy of Medical Sciences and Peking Union Medical Collegezhulan@pumch.cn
Yaqian Li1
Qing-Yang Zhang2
Bao-Fa Sun2
Yidi Ma3
Ye Zhang3
Min Wang3
Congcong Ma3
Honghui Shi3
Zhijing Sun3
Juan Chen3
Yun-Gui Yang2
Lan Zhu3
1Chinese Academy of Medical Science and Peking Union Medical College
2Beijing Institute of Genomics
3Chinese Academy of Medical Sciences and Peking Union Medical College
None

To reference this project, please use the following link:

https://explore.data.humancellatlas.dev.clevercanary.com/projects/71eb5f6d-cee0-4297-b503-b1125909b8c7
None
GEO Series Accessions:INSDC Project Accessions:INSDC Study Accessions:

Atlas

None

Analysis Portals

None

Project Label

POPVaginalWallAtlas

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

vagina

Organ Part

wall of vagina

Selected Cell Types

Unspecified

Disease Status (Specimen)

2 disease statuses

Disease Status (Donor)

4 disease statuses

Development Stage

human adult stage

Library Construction Method

2 library construction methods

Nucleic Acid Source

2 nucleic acid sources

Paired End

false, true

Analysis Protocol

data_processing_matrix

File Format

4 file formats

Cell Count Estimate

81.0k

Donor Count

21
fastq.gz30 file(s)fq.gz42 file(s)tar.gz21 file(s)xlsx1 file(s)