HCA Data Explorer

Myofibroblast transcriptome indicates SFRP2hi fibroblast progenitors in systemic sclerosis skin

Updated September 26, 2024

Skin and lung fibrosis in systemic sclerosis (SSc) is driven by myofibroblasts, alpha-smooth muscle actin expressing cells. The number of myofibroblasts in SSc skin correlates with the modified Rodnan skin score, the most widely used clinical measure of skin disease severity. Murine fibrosis models indicate that myofibroblasts can arise from a variety of different cell types, but their origin in SSc skin has remained uncertain. Utilizing single cell RNA-sequencing, we define different dermal fibroblast populations and transcriptome changes, comparing SSc to healthy dermal fibroblasts. Here, we show that SSc dermal myofibroblasts arise in two steps from an SFRP2hi/DPP4-expressing progenitor fibroblast population. In the first step, SSc fibroblasts show globally upregulated expression of transcriptome markers, such as PRSS23 and THBS1. A subset of these cells shows markers indicating that they are proliferating. Only a fraction of SFRP2hi SSc fibroblasts differentiate into myofibroblasts, as shown by expression of additional markers, SFRP4 and FNDC1. Bioinformatics analysis of the SSc fibroblast transcriptomes implicated upstream transcription factors, including FOSL2, RUNX1, STAT1, FOXP1, IRF7 and CREB3L1, as well as SMAD3, driving SSc myofibroblast differentiation.

Tracy TabibUniversity of Pittsburgh
Robert LafyatisUniversity of Pittsburghlafyatis@pitt.edu
Dan Xue1
Tracy Tabib2
Christina Morse2
Yi Yang3
Robyn T Domsic2
Dinesh Khanna4
Robert Lafyatis2
1University of Pittsburgh; Xiangya Hospital Central South University
2University of Pittsburgh
3Xiangya Hospital Central South University
4University of Michigan
Ida Zucchi

To reference this project, please use the following link:

https://explore.data.humancellatlas.dev.clevercanary.com/projects/7f351a4c-d24c-4fcd-9040-f79071b097d0
None
INSDC Project Accessions:GEO Series Accessions:INSDC Study Accessions:

Atlas

None

Analysis Portals

None

Project Label

SkinSystemicSclerosis

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

skin of body

Organ Part

skin of forearm

Selected Cell Types

Unspecified

Disease Status (Specimen)

2 disease statuses

Disease Status (Donor)

2 disease statuses

Development Stage

human adult stage

Library Construction Method

2 library construction methods

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

raw_matrix_generation

File Format

2 file formats

Cell Count Estimate

65.2k

Donor Count

22
fastq.gz318 file(s)h522 file(s)