Melanoma infiltration of stromal and immune cells
Updated January 19, 2022The cancer microenvironment is a complex ecosystem characterized by dynamic interactions between diverse cell types, including malignant, immune and stromal cells. Here, we performed single-cell RNA sequencing on CD45+ and CD45- cells isolated from tumour and lymph nodes during a mouse model of melanoma. The transcriptional profiles of these individual cells taken at different time points coupled with assembled T cell receptor sequences, allowed us to identify distinct immune subpopulations and delineate their developmental trajectory. Our study provides insights into the complex interplay among cells within the tumour microenvironment and presents a valuable resource for future translational applications.
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Atlas
Analysis Portals
NoneProject Label
Mouse MelanomaSpecies
Mus musculus
Sample Type
specimens
Anatomical Entity
Organ Part
Unspecified
Selected Cell Types
Disease Status (Specimen)
Unspecified
Disease Status (Donor)
melanoma (disease)
Development Stage
adult
Library Construction Method
Smart-seq2
Nucleic Acid Source
single cell
Paired End
trueAnalysis Protocol
MultiSampleSmartSeq2_v2.2.6, SmartSeq2SingleSample_v5.1.5File Format
Cell Count Estimate
6.6kDonor Count
32