HCA Data Explorer

Transcriptome Landscape of Human Folliculogenesis Reveals Oocytes and Granulosa Cells Interactions

Updated September 30, 2021

The dynamic transcriptional regulation and interactions of human germlines and surrounding somatic cells during folliculogenesis remains unknown. Using RNA-Seq analysis of human oocytes and corresponding granulosa cells (GCs) spanning five follicular stages, we revealed unique features in transcriptional machinery, transcription factor networks and reciprocal interactions in human oocytes and GCs that displayed developmental-stage-specific expression patterns. Notably, we identified specific gene signatures of two cell types in particular developmental stage that may reflect developmental competency and ovarian reserve. Additionally, we uncovered key pathways that may concert germline-somatic interactions and drive the transition of primordial-to-primary follicle which represents follicle activation. Thus, our work provides key insights into the crucial features of the transcriptional regulation in the stepwise folliculogenesis and offers important clues for improving follicle recruitment in-vivo and restoring fully competent oocytes in-vitro.

Yan ZhiqiangPeking Universityzqyan@pku.edu.cn
Yan Zhiqiang (Experimental Scientist)1
1Peking University
Stephenson Asgton
Pereira Tiana
Nejad Parisa
Schwartz Rachel

To reference this project, please use the following link:

https://explore.data.humancellatlas.dev.clevercanary.com/projects/946c5add-47d1-402a-97bb-a5af97e8bce7

Supplementary links are provided by contributors and represent items such as additional data which can’t be hosted here; code that was used to analyze this data; or tools and visualizations associated with this specific dataset.

1.ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107746/suppl/GSE107746_Folliculogenesis_FPKM.log2.txt.gz
INSDC Project Accessions:GEO Series Accessions:

Atlas

None

Analysis Portals

None

Project Label

TranscriptomeLandscapeHumanFollicle

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

ovary

Organ Part

5 organ parts

Selected Cell Types

2 cell types

Disease Status (Specimen)

normal

Disease Status (Donor)

normal

Development Stage

human adult stage

Library Construction Method

Smart-like

Nucleic Acid Source

single cell

Paired End

false

File Format

2 file formats

Cell Count Estimate

148

Donor Count

7
fastq.gz296 file(s)txt.gz1 file(s)