HCA Data Explorer

A Single-Cell Characterization of Human Post-implantation Embryos Cultured In Vitro Delineates Morphogenesis in Primary Syncytialization

Updated October 1, 2022

We performed single-cell RNA sequencing (scRNA-seq) analysis of human post-implantation trophoblast cells. A hierarchical model was established, which was characterized by the sequential and stepwise development of two primitive cytotrophoblast cell (pCTB) subtypes after the trophectoderm (TE), two primitive syncytiotrophoblast (pSTB) subtypes, and migrative trophoblast cells (MTB). Further analysis characterized a new subtype of fusion-competent cells, which not only prepare for fusion to form primitive syncytiotrophoblast but also possess migration ability, which could be dual-function cells during implantation. Our work allows for reconstruction of sequential trophoblast cell transcriptional programs transition during implantation and provides a valuable resource to study pathologies in early pregnancy, such as recurrent implantation failure.

Xiangxiang JiangChinese Academy of Sciencesjzhongqiang@126.com
Xiangxiang Jiang (Experimental Scientist)1
1Chinese Academy of Sciences
Rachel Schwartz

To reference this project, please use the following link:

https://explore.data.humancellatlas.dev.clevercanary.com/projects/9ac53858-606a-4b89-af49-804ccedaa660
None
INSDC Project Accessions:GEO Series Accessions:INSDC Study Accessions:

Atlas

None

Analysis Portals

None

Project Label

humanTrophoblastCulture

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

embryo

Organ Part

extraembryonic tissue

Selected Cell Types

trophoblast cell

Disease Status (Specimen)

normal

Disease Status (Donor)

normal

Development Stage

human embryonic stage

Library Construction Method

Smart-like

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

analysis_protocol_1, analysis_protocol_2

File Format

3 file formats

Cell Count Estimate

1.0k

Donor Count

12
csv.gz2 file(s)fastq.gz38 file(s)xlsx1 file(s)