Single-cell RNA-sequencing of skin, fresh blood, and cultured peripheral blood mononuclear cells from a patient with drug-induced hypersensitivity syndrome and healthy volunteers

Updated March 31, 2025

Purpose: Determine new therapeutic targets for a refractory drug-induced hypersensitivity syndrome/DRESS using single cell transcriptomic analysis.,"Methods: Skin cells were dissociated from skin biopsies of a patient with DRESS and 5 healthy volunteers using enzymatic digestion, then viable skin cells were sorted using flow cytometry. Peripheral blood mononuclear cells (PBMCs) were isolated from peripheral blood using Ficoll-paque density separation. PBMCs were cultured with or without medications for 4 days. In detail, 200,000 PBMCs were cultivated in 200ul of RPMI-1640 supplemented with 10% human AB serum with (PBMC_T4_BACT) or without (PBMC_T4_CTRL) 48 ug/mL sulfamethoxazole/trimethoprim (SMX-TMP). For the in vitro therapeutic experiments, PBMCs were cultured in the presence of SMX-TMP with (DRESS_Day4_TOFA) or without (DRESS_Day4_BACT) tofacitinib. The patient was treated with 10mg/d of tofacitinib, a JAK3 inhibitor. The freshly isolated PBMCs were collected again two weeks after initiation of intervention (PBMC_POST2W). Single cells from the skin, freshly isolated PBMCs, and culture PBMCs were captured using droplet based single-cell approach (10x Genomics) and library were prepared.","Results: The lymphocytes in skin and PBMCs exhibited upregulation of skin-homing chemokine receptors, CCR4 and CCR10, and JAK3 and STAT1. Treatment with tofacitinib dramatically extinguished skin inflammation in a chronic refractory case of DiHS/DRESS.","Conclusions: A successful intervention with tofacitinib in a refractory case of DiHS/DRESS was guided by the use of scRNAseq, which demonstrated aberrant activity in the JAK-STAT pathway."

Keisuke NagaoNational Institute of Arthritis and Musculoskeletal and Skin Diseases (NIAMS), NIHkeisuke.nagao@nih.gov
Doyoung Kim (Experimental Scientist)1
Tetsuro Kobayashi1
Benjamin Voisin1
Jay-Hyun Jo1
Keiko Sakamoto1
Seon-Pil Jin1
Michael Kelly2
Helena B Pasieka3
Jessica L Naff4
Jon H Meyerle4
Ijeoma D Ikpeama5
Gary A Fahle5
Fred P Davis1
Sergio D Rosenzweig1
Julie C Alejo6
Stefania Pittaluga6
Heidi H Kong1
Alexandra F Freeman7
Keisuke Nagao1
1National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIAMS), NIH
2Frederick National Laboratory for Cancer Research
3MedStar Washington Hospital Center & Georgetown University Hospital
4Walter Reed National Military Medical Center
5Clinical Center, National Health Institute
6Center for Cancer Research, National Cancer Institute
7National Institute of Allergy and Infectious Diseases (NIAID), NIH
Kamron Mojabe
Hernandez Karina
Parisa Nejad
Arsenios Chatzigeorgiou

To reference this project, please use the following link:

https://explore.data.humancellatlas.dev.clevercanary.com/projects/9d97f01f-9313-416e-9b07-560f048b2350
None
INSDC Project Accessions:
GEO Series Accessions:
INSDC Study Accessions:

Atlas

SkinSkin v1.0

Analysis Portals

None

Project Label

HumanSkinBloodHypSensAndNormalKim

Species

Homo sapiens

Sample Type

specimens

Anatomical Entity

2 anatomical entities

Organ Part

2 organ parts

Selected Cell Types

4 cell types

Disease Status (Specimen)

3 disease statuses

Disease Status (Donor)

2 disease statuses

Development Stage

human adult stage

Library Construction Method

2 library construction methods

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

cellranger_202, cellranger_210, cellranger_211, optimus_post_processing_v1.0.0, optimus_v4.2.3

File Format

9 file formats

Cell Count Estimate

54.5k

Donor Count

8
bam18 file(s)fastq.gz102 file(s)h514 file(s)loom20 file(s)mtx10 file(s)Rdata3 file(s)tar1 file(s)tsv20 file(s)xlsx1 file(s)
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