HCA Data Explorer

Single cell transcriptional profiling of spleens from mice flown on Rodent Research Reference Mission-2

Updated January 11, 2024

In the Rodent Research Reference Mission (RRRM-2), forty female C57BL/6NTac mice were flown on the International Space Station. To assess differences in outcomes due to age, twenty 12 week-old and twenty 29 week-old mice were flown, respectively. To directly assess spaceflight effects, half of the young and old mice (10 old, 10 young) were sacrificed on-orbit after 55-58 days (ISS Terminal, ISS-T), while the other half (10 old, 10 young) were returned live to Earth after 32 days and allowed to recover for 24 days (Live Animal Return, LAR) before sacrifice. ISS-T and LAR mice were the same age at sacrifice. Both the ISS-T and LAR animals had independent ground controls (10 mice per group housed in flight hardware in matched environmental conditions), basal controls (10 mice per group sacrificed 2 days before launch), and vivarium controls (10 mice per group housed within standard vivarium habitats). Thus RRRM-2 included a total of 160 mice. This study includes single cell transcriptional profiling data from the spleens from 4 young LAR flight animals, 4 old LAR flight animals, 4 young LAR ground control animals, and 4 old LAR ground control animals.

Jonathan M GalazkaNASAjonathan.m.galazka@nasa.gov
Jonathan M Galazka (Conceptualization Role)1
Cassie Juran (Conceptualization Role)1
Egle Cekanaviciute (Conceptualization Role)1
San-Huei Lai Polo (Data Curation Role)1
Amanda M Saravia-Butler (Formal Analysis Role)1
Valery Boyko (Investigation Role)1
Cassie Juran (Investigation Role)1
Louis Stodieck (Project Administration Role)2
Michael Roberts (Project Administration Role)3
Sylvain V Costes (Project Administration Role)1
Samrawit G Gebre (Project Administration Role)1
Virginia Ferguson (Project Administration Role)4
1NASA
2BioServe Space Technologies
3ISS National Lab
4University of Colorado
None

To reference this project, please use the following link:

https://explore.data.humancellatlas.dev.clevercanary.com/projects/aff9c3cd-6b84-4fc2-abf2-b9c0b3038277

Supplementary links are provided by contributors and represent items such as additional data which can’t be hosted here; code that was used to analyze this data; or tools and visualizations associated with this specific dataset.

1.https://genelab-data.ndc.nasa.gov/genelab/accession/GLDS-405/
None

Atlas

None

Analysis Portals

None

Project Label

NasaSpaceMiceSpleens

Species

Mus musculus

Sample Type

specimens

Anatomical Entity

spleen

Organ Part

Unspecified

Selected Cell Types

splenocyte

Disease Status (Specimen)

normal

Disease Status (Donor)

normal

Development Stage

mouse postnatal

Library Construction Method

10x 3' v3

Nucleic Acid Source

single cell

Paired End

false

Analysis Protocol

analysis_protocol_1

File Format

3 file formats

Cell Count Estimate

80.0k

Donor Count

16
fastq.gz32 file(s)xlsx1 file(s)zip1 file(s)