scRNA-seq assessment of the human lung, spleen, and esophagus tissue stability after cold preservation
Updated June 19, 2024Assessment of the effect of cold ischaemic time on single cell RNAseq data from human tissues using 10x Genomics 3' single cell RNA sequencing. This project contains data for spleen, oesophagus epithelium and lung parenchyma, three tissues that had previously been reported to have differential sensitivity to ischaemia. Samples were collected into Hypothermasol FRS hypothermic preservation media and dissociated fresh (as soon as possible) or at 12h, 24h, 72h post onset of cold ischaemia in the donor. Single cell and bulk RNA sequencing data was generated at each time point and whole genome sequencing was carried out for each donor.
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Atlas
Analysis Portals
Project Label
TissueStabilitySpecies
Homo sapiens
Sample Type
specimens
Anatomical Entity
Organ Part
Selected Cell Types
Disease Status (Specimen)
Unspecified
Disease Status (Donor)
normal
Development Stage
human adult stage
Library Construction Method
Nucleic Acid Source
Paired End
false, trueAnalysis Protocol
optimus_post_processing_v1.0.0, optimus_v4.2.2File Format
Cell Count Estimate
199.8kDonor Count
14