HCA Data Explorer

Single-cell transcriptomic analyses provide insights into the developmental origins of neuroblastoma.

Updated December 13, 2022

Neuroblastoma is a pediatric tumor of the developing sympathetic nervous system. However, the cellular origin of neuroblastoma has yet to be defined. Here we studied the single-cell transcriptomes of neuroblastomas and normal human developing adrenal glands at various stages of embryonic and fetal development. We defined normal differentiation trajectories from Schwann cell precursors over intermediate states to neuroblasts or chromaffin cells and showed that neuroblastomas transcriptionally resemble normal fetal adrenal neuroblasts. Importantly, neuroblastomas with varying clinical phenotypes matched different temporal states along normal neuroblast differentiation trajectories, with the degree of differentiation corresponding to clinical prognosis. Our work highlights the roles of oncogenic MYCN and loss of TFAP2B in blocking differentiation and may provide the basis for designing therapeutic interventions to overcome differentiation blocks.

Frank WestermannHopp Children's Cancer Center Heidelberg (KiTZ), Heidelbergf.westermann@kitz-heidelberg.de
Selina Jansky1
Ashwini Kumar Sharma2
Verena Körber3
Andrés Quintero4
Umut H Toprak1
Elisa M Wecht5
Moritz Gartlgruber5
Alessandro Greco6
Elad Chomsky7
Thomas GP Grünewald5
Kai-Oliver Henrich5
Amos Tanay7
Carl Herrmann8
Thomas Höfer9
Frank Westermann5
1Hopp Children's Cancer Center Heidelberg (KiTZ), Heidelberg, Germany.
2Health Data Science Unit, Medical Faculty University Heidelberg and BioQuant, Heidelberg, Germany.
3Division of Theoretical Systems Biology, German Cancer Research Center (DKFZ), Heidelberg, Germany.
4Faculty of Biosciences, Heidelberg University, Heidelberg, Germany.
5Hopp Children's Cancer Center Heidelberg (KiTZ), Heidelberg
6Faculty of Biosciences, Heidelberg University, Heidelberg
7Department of Computer Science and Applied Mathematics and Department of Biological Regulation, Weizmann Institute of Science, Rehovot
8Health Data Science Unit, Medical Faculty University Heidelberg and BioQuant, Heidelberg
9Division of Theoretical Systems Biology, German Cancer Research Center (DKFZ), Heidelberg
Ami Day

To reference this project, please use the following link:

https://explore.data.humancellatlas.dev.clevercanary.com/projects/c8e6c5d9-fcde-4845-bead-ff96999e3051

Supplementary links are provided by contributors and represent items such as additional data which can’t be hosted here; code that was used to analyze this data; or tools and visualizations associated with this specific dataset.

1.https://adrenal.kitz-heidelberg.de/developmental_programs_NB_viz/
INSDC Project Accessions:
SRP298344, SRP299148, SRP299149
EGA Accessions:GEO Series Accessions:INSDC Study Accessions:

Atlas

None

Analysis Portals

None

Project Label

DevelopmentalOriginsNeuroblastoma

Species

Homo sapiens

Sample Type

2 sample types

Anatomical Entity

8 anatomical entities

Organ Part

7 organ parts

Selected Cell Types

Unspecified

Model Organ

3 model organs

Disease Status (Specimen)

2 disease statuses

Disease Status (Donor)

2 disease statuses

Development Stage

9 development stages

Library Construction Method

4 library construction methods

Nucleic Acid Source

3 nucleic acid sources

Paired End

false, true

Analysis Protocol

analysis_protcol_primary_cell_calling, analysis_protocol_bulk_cell_line_raw, analysis_protocol_cell_line_processed_1, analysis_protocol_cell_line_processed_2, analysis_protocol_primary

File Format

4 file formats

Cell Count Estimate

220.5k

Donor Count

34
fastq.gz48 file(s)rds1 file(s)tsv.gz4 file(s)xlsx2 file(s)