Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis.
Updated July 19, 2022Single-cell RNA sequencing of cerebrospinal fluid and PBMCs from Multiple sclerosis patients.
David Schafflick1
Chenling A Xu2
Maike Hartlehnert1
Michael Cole2
Andreas Schulte-Mecklenbeck1
Tobias Lautwein1
Jolien Wolbert1
Michael Heming1
Sven G Meuth1
Tanja Kuhlmann1
Catharina C Gross1
Heinz Wiendl1
Nir Yosef2
Gerd Meyer Zu Horste1
1University Hospital Münster
2University of California
Ami Day
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None
INSDC Project Accessions:GEO Series Accessions:INSDC Study Accessions:
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Atlas
None
Analysis Portals
NoneProject Label
SingleCellsMultipleSclerosisSpecies
Homo sapiens
Sample Type
specimens
Anatomical Entity
2 anatomical entities
Organ Part
cerebrospinal fluid
Selected Cell Types
T follicular helper cell
Disease Status (Specimen)
2 disease statuses
Disease Status (Donor)
2 disease statuses
Development Stage
human adult stage
Library Construction Method
2 library construction methods
Nucleic Acid Source
2 nucleic acid sources
Paired End
falseAnalysis Protocol
alignment_and_transcript_counting_bulk_FPKM, alignment_and_transcript_counting_bulk_RSEM, alignment_and_transcript_counting_singlecellsFile Format
3 file formats
Cell Count Estimate
65.3kDonor Count
30csv.gz6 file(s)tar1 file(s)txt.gz4 file(s)